B202

Winnie W.M. Lam, Keith C.C. Chan, David K.Y. Chiu, and Andrew K.C. Wong, "MAGMA: AN ALGORITHM FOR MINING MULTI-LEVEL PATTERNS"
Author Email(s): cswinnie@comp.polyu.edu.hk
Contact Person: Winnie W.M. Lam <cswinnie@comp.polyu.edu.hk>

 

B213

Shusaku Tsumoto, Kimiko Matsuoka, and Shigeki Yokoyama, "Mining Rules for Risk Factors on Blood Stream Infection in Hospital Information System"
Author Email(s): tsumoto@computer.org, cby41060@pop01.odn.ne.jp, shigey@st.rim.or.jp
Contact Person: Shusaku Tsumoto <tsumoto@computer.org>

 

B215

Shengyin Gu, Olivier Poch, Bernd Hamann, and Patrice Koehl, "The Geometric Representation of Protein Sequences"
Author Email(s): gus@cs.ucdavis.edu, poch@titus.u-strasbg.fr, hamann@cs.ucdavis.edu, koehl@cs.ucdavis.edu
Contact Person: Shengyin Gu <gus@cs.ucdavis.edu>

 

B222

Feng Yue and jijun Tang, "A Divide-and-Conquer Implementation of Three Sequence Alignment and Ancestor Inference"
Author Email(s): yuef@engr.sc.edu, jtang@cse.sc.edu
Contact Person: Feng Yue <yuef@engr.sc.edu>

 

B224

Soo-Yeon Ji, Toan Huynh, and Kayvan Najarian, "A Comparative Medical Informatics Approach to Traumatic Pelvic Injuries"
Author Email(s): soji@uncc.edu, toan.huynh@carolinashealthcare.org, knajaria@uncc.edu
Contact Person: Soo-Yeon Ji <soji@uncc.edu>

 

B227

Oliver Amft, Martin Kusserow, and Gerhard Troester, "Identification of temporal structures in chewing sounds"
Author Email(s): amft@ife.ee.ethz.ch
Contact Person: Oliver Amft <amft@ife.ee.ethz.ch>

 

B228

Dumitru Brinza and Alexander Zelikovsky, "Risk Factor Searching Heuristics for SNP Case-Control Studies"
Author Email(s): dima@cs.ucsd.edu, alexz@cs.gsu.edu
Contact Person: Dumitru Brinza <dima@cs.ucsd.edu>

 

B229

Dragana Veljkovic, Kay Robbins, Doug Rubino, and Nicholas Hatsopoulos, "Exploring and Organizing Spatiotemporal Features such as Waves in High Throughput Brain Recordings by Lifting to Feature Space"
Author Email(s): dveljkov@cs.utsa.edu, krobbins@cs.utsa.edu, drubino@ucsd.edu, nicho@uchicago.edu
Contact Person: Dragana Veljkovic <dveljkov@cs.utsa.edu>

 

B235

Yutaka Sasaki, Brian Rea, and Sophia Ananiadou, "Multi-Topic Aspects in Clinical Text Classification"
Author Email(s): yutaka.sasaki@manchester.ac.uk, brian.rea@manchester.ac.uk, sophia.ananiadou@manchester.ac.uk
Contact Person: Yutaka Sasaki <yutaka.sasaki@manchester.ac.uk>

 

B238

Tingting Li, Hu Fu, and Xuegong Zhang, "Prediction of Kinase-Specific Phosphorylation Sites by One-Class SVMs"
Author Email(s): li-tt03@mails.tsinghua.edu.cn, fu.hu.thu@gmail.com, zhangxg@tsinghua.edu.cn
Contact Person: Xuegong Zhang <zhangxg@tsinghua.edu.cn>

 

B240

Dan He and Xindong Wu, "SAIL-APPROX: An Efficient On-line Algorithm for Approximate Pattern Matching with Wildcards and Length Constraints"
Author Email(s): hedanxkhc@hotmail.com, xwu@cs.uvm.edu
Contact Person: Dan He <hedanxkhc@hotmail.com>

 

B242

Fatih Altiparmak, Selnur Erdal, Ozgur Ozturk, and Hakan Ferhatosmanoglu, "A Multi-Metric Similarity Based Analysis of Microarray Data"
Author Email(s): altiparm@cse.ohio-state.edu, Selnur.Erdal@osumc.edu, ozturk@cse.ohio-state.edu
Contact Person: Fatih Altiparmak <altiparm@cse.ohio-state.edu>

 

B245

Thanh Phuong Nguyen and Tu Bao Ho, "A Semi-Supervised Learning Approach to Disease Gene Prediction"
Author Email(s): phuong@jaist.ac.jp, bao@jaist.ac.jp
Contact Person: Thanh Phuong Nguyen <phuong@jaist.ac.jp>

 

B248

Luca Bortolussi, Simone Fonda, and Alberto Policriti, "Constraint-based simulation of biological systems described by Molecular Interaction Maps"
Author Email(s): luca@dmi.units.it, simone.fonda@gmail.com, policriti@dimi.uniud.it
Contact Person: Luca Bortolussi <luca@dmi.units.it>

 

B249

Yudong Sun, Steve McKeever, Kia Balali-Mood, and Mark Sansom, "A Multiscale Model for Efficient Simulation of a Membrane Bound Viral Fusion Peptide"
Author Email(s): Yudong.Sun@comlab.ox.ac.uk, Steve.Mckeever@comlab.ox.ac.uk, Kia.Balali-Mood@bioch.ox.ac.uk, Mark.Sansom@bioch.ox.ac.uk
Contact Person: Yudong Sun <Yudong.Sun@comlab.ox.ac.uk>

 

B250

Satu Jääskeläinen, Pentti Riikonen, Tapio Salakoski, and Mauno Vihinen, "Evaluation of protein hydropathy scales"
Author Email(s): sahaja@utu.fi, penrii@utu.fi, tapio.salakoski@utu.fi, Mauno.Vihinen@uta.fi
Contact Person: Satu Jääskeläinen <sahaja@utu.fi>

 

B251

Valeria Fionda, Luigi Palopoli, Simona Panni, and Simona E. Rombo, "Bi-GRAPPIN: Bipartite GRAph based Protein-Protein Interaction Networks similarity search."
Author Email(s): fionda@si.deis.unical.it, palopoli@deis.unical.it, simona.panni@unical.it, simona.rombo@deis.unical.it
Contact Person: Simona E. Rombo <simona.rombo@deis.unical.it>

 

B252

Chetan Mittal, Nevenka Dimitrova, and Bhaskar Azad, "MDDM: A Resource for Differential Methylation in Cancer"
Author Email(s): chetan.mittal@philips.com, nevenka.dimitrova@philips.com, abhaskar@blr.pin.philips.com
Contact Person: Chetan Mittal <chetan.mittal@philips.com>

 

B255

Lei Yu, "Feature Cluster Selection for High-Throughput Data Analysis"
Author Email(s): lyu@cs.binghamton.edu
Contact Person: Lei Yu <lyu@cs.binghamton.edu>

 

B257

Ricardo Martinez, Claude Pasquier, and Nicolas Pasquier, "GenMiner: Mining Informative Association Rules from Genomic Data"
Author Email(s): rmartine@i3s.unice.fr, claude.pasquier@unice.fr, pasquier@i3s.unice.fr
Contact Person: Nicolas Pasquier <pasquier@i3s.unice.fr>

 

B260

Sun Kim, Ankita Bhan, Bharat Kumar Maryada, Kwangmin Choi, and Yves Brun, "EGGS: Extraction of Gene clusters using Genome context based Sequence matching techniques"
Author Email(s): sunkim2@indiana.edu, abhan@indiana.edu, bmaryada@indiana.edu, kwchoi@indiana.edu, ybrun@indiana.edu
Contact Person: Sun Kim <sunkim2@indiana.edu>

 

B262

Arnaud FONTAINE and Hélène TOUZET, "Computational identification of protein-coding sequences by comparative analysis"
Author Email(s): fontaina@lifl.fr, touzet@lifl.fr
Contact Person: Arnaud FONTAINE <fontaina@lifl.fr>

 

B267

Lenwood Heath and Amrita Pati, "Predicting Markov chain order in genomic sequences"
Author Email(s): heath@vt.edu, apati@vt.edu
Contact Person: Amrita Pati <apati@vt.edu>

 

B269

Michele Berlingerio, Francesco Bonchi, Fosca Giannotti, and Franco Turini, "Mining Clinical Data with a Temporal Dimension: a Case Study"
Author Email(s): michele.berlingerio@imtlucca.it, francesco.bonchi@isti.cnr.it
Contact Person: Francesco Bonchi <francesco.bonchi@isti.cnr.it>

 

B272

Hara Stefanou, Thanasis Margaritis, Dimitris Kafetzopoulos, Kostas Marias, and Panagiotis Tsakalides, "Microarray Image Denoising Using a Two-Stage Multiresolution Technique"
Author Email(s): hstef@ics.forth.gr, thama@imbb.forth.gr, kafetzo@imbb.forth.gr, kmarias@ics.forth.gr, tsakalid@ics.forth.gr
Contact Person: Hara Stefanou <hstef@ics.forth.gr>

 

B273

Denise Jones, Ying Jin, and Huaqin Xu, "An Active Rule-Based Approach for Constraint Management of Biological Data in XML Documents"
Author Email(s): denisej@stanford.edu, jiny@ecs.csus.edu, huaxu@ucdavis.edu
Contact Person: Denise Jones <denisej@stanford.edu>

 

B274

Younhee Ko, Sandra Zas, and Chengxiang Zhai, "Inference of Gene Pathways Using Gaussian Mixture Models"
Author Email(s): younko@uiuc.edu, rodrgzzs@uiuc.edu, czhai@uiuc.edu
Contact Person: Younhee Ko <younko@uiuc.edu>

 

B276

Christophe Nicolas Magnan, Cécile Capponi, and François Denis, "A Protocol to Detect Local Affinities Involved in Proteins Distant Interactions"
Author Email(s): christophe.magnan@lif.univ-mrs.fr, cecile.capponi@lif.univ-mrs.fr, francois.denis@lif.univ-mrs.fr
Contact Person: Christophe Nicolas Magnan <christophe.magnan@lif.univ-mrs.fr>

 

B277

Brandon Smith, Sandra Rodriguez-Zas, and Bruce Southey, "Smoothing Spline Mixed Effects Modelings of Multifactorial Gene Expression Profiles"
Author Email(s): bjsmith4@uiuc.edu, rodrgzzs@uiuc.edu, southey@uiuc.edu
Contact Person: Brandon Smith <bjsmith4@uiuc.edu>

 

B279

Sachin Mathur and Deendayal Dinakarpandian, "A New Metric to Measure Gene Product Similarity"
Author Email(s): sm7rf@umkc.edu, dinakard@umkc.edu
Contact Person: Deendayal Dinakarpandian <dinakard@umkc.edu>

 

B280

Mutlu Mete, Xiaowei Xu, Chun-Yang Fan, and Gal Shafirstein, "A Machine Learning Approach for Identification of Head and Neck Squamous Cell Carcinoma"
Author Email(s): mxmete@ualr.edu, xwxu@ualr.edu, fanchunyang@uams.edu, shafirsteingal@uams.edu
Contact Person: Mutlu Mete <mxmete@ualr.edu>

 

B281

Byung-Hoon Park, Bing Zhang, Tatiana Karpinets, and Nagiza Samatova, "Multi-Stage framework to infer protein functional modules from mass spectrometry pull-down data with assessment of biological relevance"
Author Email(s): parkbh@ornl.gov
Contact Person: Byung-Hoon Park <parkbh@ornl.gov>

 

B282

Feihong Wu, Fadi Towfic, Drena Dobbs, and Vasant Honavar, "Analysis of Protein Protein Dimeric Interfaces"
Author Email(s): wuflyh@cs.iastate.edu, ftowfic@iastate.edu, ddobbs@iastate.edu, honavar@cs.iastate.edu
Contact Person: Feihong Wu <wuflyh@cs.iastate.edu>

 

B283

Karin Noy and Daniel Fasulo, "Robust Estimation and Graph-based Meta Clustering for LC-MS Feature Extraction"
Author Email(s): karin.noy@siemens.com, daniel.fasulo@siemens.com
Contact Person: Daniel Fasulo <daniel.fasulo@siemens.com>

 

B284

Jaegul Choo, Hyunsoo Kim, Haesun Park, and Hongyuan Zha, "A Comparison of Unsupervised Dimension Reduction Algorithms for Classification"
Author Email(s): joyfull@cc.gatech.edu, hskim@cc.gatech.edu, hpark@cc.gatech.edu, zha@cc.gatech.edu
Contact Person: Jaegul Choo <joyfull@cc.gatech.edu>

 

B285

Quan Wen and Jean Gao, "Multiple Interacting Subcellular Structure Tracking By Sequential Monte Carlo Method"
Author Email(s): qwen@cse.uta.edu, gao@cse.uta.edu
Contact Person: Quan Wen <qwen@cse.uta.edu>

 

B286

Leonardo Bobadilla, Fernando Niño, Edilberto Cepeda, and Manuel Patarroyo, "A Novel Methodology for Characterizing and Predicting Protein Functional Sites"
Author Email(s): jlbobadillam@unal.edu.co
Contact Person: Leonardo Bobadilla <jlbobadillam@unal.edu.co>

 

B288

Frank DiMaio, Ameet Soni, George Phillips, and Jude Shavlik, "Improved Methods for Template-Matching in Electron Density Maps Using Spherical Harmonics"
Author Email(s): dimaio@cs.wisc.edu, soni@cs.wisc.edu, phillips@biochem.wisc.edu, shavlik@cs.wisc.edu
Contact Person: Frank DiMaio <dimaio@cs.wisc.edu>

 

B290

Reda Alhajj, "Multi-Agent System for Translation Initiation Site Prediction"
Author Email(s): alhajj@cpsc.ucalgary.ca
Contact Person: Reda Alhajj <alhajj@cpsc.ucalgary.ca>

 

B291

Jung Hun Oh, Young Bun Kim, Prem Gurnani, Kevin Rosenblatt, and Jean Gao, "A Novel Classification Method for Analyzing Multi-Stage Diseases Using MALDI-TOF Mass Spectra"
Author Email(s): jung.oh@uta.edu
Contact Person: Jung Hun Oh <jung.oh@uta.edu>

 

B292

Sai Moturu, William Johnson, and Huan Liu, "Predicting Future High-Cost Patients: A Real-World Risk Modeling Application"
Author Email(s): smoturu@asu.edu, william.g.johnson@asu.edu, hliu@asu.edu
Contact Person: Sai Moturu <smoturu@asu.edu>

 

B298

Min Song and Illhoi yoo, "A Hybrid Abbreviation Extraction Technique for Biomedical Literature"
Author Email(s): min.song@njit.edu, yooil@health.missouri.edu
Contact Person: Min Song <min.song@njit.edu>

 

B300

Xin Li, Jiexun Li, Zhu Zhang, and Hsinchun Chen, "Graph Kernel-based Learning for Gene Function Prediction from Gene Interaction Network"
Author Email(s): xinli@eller.arizona.edu, jiexun@eller.arizona.edu, zhuzhang@eller.arizona.edu, hchen@eller.arizona.edu
Contact Person: Xin Li <xinli@eller.arizona.edu>

 

B301

Abanish Singh, Cedric Feschotte, and Nikola Stojanovic, "Micro-repetitive structure of genomic sequences and the identification of ancient repeat elements"
Author Email(s): singh@cse.uta.edu, cedric@uta.edu, nick@cse.uta.edu
Contact Person: Nikola Stojanovic <nick@cse.uta.edu>

 

B307

Fusheng Wang, Cornelius Rabsch, and Peiya Liu, "Using SVG to Model and Query Image Annotations and their History"
Author Email(s): wangfsh@gmail.com, c.rabsch@gmail.com, peiya.liu@siemens.com
Contact Person: Fusheng Wang <wangfsh@gmail.com>

 

B308

Jiaxing Xue, Jean Gao, and Liping Tang, "Mathematical modeling of phagocyte chemotaxis toward and adherence to biomaterial implants"
Author Email(s): joshjx@yahoo.com, gao@uta.edu, ltang@uta.edu
Contact Person: Jiaxing Xue <joshjx@yahoo.com>

 

B309

Razvan Andonie, Levente Fabry-Asztalos, Lukas Magill, and Sarah Abdul-Wahid, "A New Fuzzy ARTMAP Approach for Predicting Biological Activity of Potential HIV-1 Protease Inhibitors"
Author Email(s): andonie@cwu.edu, fabryl@cwu.edu, magilll@cwu.edu, abdulwahids@gmail.com
Contact Person: Razvan Andonie <andonie@cwu.edu>

 

B313

Dharmesh Thakkar, Carolina Ruiz, and Elizabeth Ryder, "Hypothesis-Driven Specialization of Gene Expression Association Rules"
Author Email(s): dharmesh.thakkar@gmail.com, ruiz@cs.wpi.edu, ryder@wpi.edu
Contact Person: Carolina Ruiz <ruiz@cs.wpi.edu>

 

B314

Fang Fang, Xiangjun Liu, and Robert Grossman, "Generate Unique Keys for Metabolic Pathways"
Author Email(s): ffang2@uic.edu, frank@lac.uic.edu, grossman@uic.edu
Contact Person: Robert Grossman grossman@uic.edu

 

B318

James Z. Wang, Zhidian Du, Philip S. Yu, and Chin-Fu Chen, "An Efficient Online Tool to Search Top-N Genes with Similar Biological Functions in Gene Ontology Database"
Author Email(s): jzwang@cs.clemson.edu, zdu@cs.clemson.edu, psyu@us.ibm.com, cchen@clemson.edu
Contact Person: James Z. Wang <jzwang@cs.clemson.edu>

 

B319

Yhi Shiau, Jia-Nan Wang, Yu-Feng Huang, and Chien-Kang Huang, "Heuristic Strategy for Geometric Hashing based Protein Structure Comparison of Ellipsoidal Representation"
Author Email(s): yshiau@cht.com.tw, jnwang@mars.csie.ntu.edu.tw, yfhuang@csie.ntu.edu.tw, ckhuang@ntu.edu.tw
Contact Person: Yu-Feng Huang <yfhuang@csie.ntu.edu.tw>

 

B321

SANTA DI CATALDO, ELISA FICARRA, and ENRICO MACII, "SELECTION OF TUMOR AREAS AND SEGMENTATION OF NUCLEAR MEMBRANES IN TISSUE CONFOCAL IMAGES: A FULLY-AUTOMATED APPROACH"
Author Email(s): santa.dicataldo@polito.it, elisa.ficarra@polito.it, enrico.macii@polito.it
Contact Person: SANTA DI CATALDO <santa.dicataldo@polito.it>

 

B323

Antonio Ruiz, Olcay Sertel, Manuel Ujaldon, Umit Catalyurek, Joel Saltz, and Metin Gurcan, "Pathological Image Analysis Using the GPU: Stroma Classification for Neuroblastoma"
Author Email(s): aruiz@ac.uma.es, osertel@bmi.osu.edu, ujaldon@ac.uma.es, umit@bmi.osu.edu, saltz@bmi.osu.edu, gurcan@bmi.osu.edu
Contact Person: Manuel Ujaldon <ujaldon@ac.uma.es>

 

B328

Aaron Smalter, Seak Fei Lei, and Xue-wen Chen, "Human Disease-gene Classification with Integrative Sequence-based and Topological Features of Protein-protein Interaction Networks"
Author Email(s): asmalter@ku.edu, seakfei@ku.edu, xwchen@ku.edu
Contact Person: Xue-wen Chen <xwchen@ku.edu>

 

B330

Shihyen Chen, Bin Ma, and Kaizhong Zhang, "The Normalized Similarity Metric and Its Applications"
Author Email(s): schen@csd.uwo.ca, bma@csd.uwo.ca, kzhang@csd.uwo.ca
Contact Person: Shihyen Chen <schen@csd.uwo.ca>

 

B332

Duong Doan and Patricia Evans, "A Haplotyping Algorithm for Non-Recombinant Pedigree Data Containing Missing Members"
Author Email(s): b89ct@unb.ca, pevans@unb.ca
Contact Person: Duong Doan <b89ct@unb.ca>

 

B333

Oliver Ruebenacker, Ion Moraru, James Schaff, and Michael Blinov, "Kinetic Modeling using BioPAX ontology"
Author Email(s): curoli@gmail.com, moraru@neuron.uchc.edu, schaff@neuron.uchc.edu, blinov@uchc.edu
Contact Person: Michael Blinov <blinov@uchc.edu>

 

B334

Samik Ghosh, Preetam Ghosh, Kalyan Basu, and Sajal Das, "Modeling the stochastic dynamics of gene expression in single cells: A Birth and Death Markov Chain Analysis"
Author Email(s): sghosh@cse.uta.edu
Contact Person: Samik Ghosh <sghosh@cse.uta.edu>

 

B335

Paul Gordon, Edward Kawas, Mark Wilkinson, and Christoph Sensen, "Using a novel data transformation technique to provide the EMBOSS software suite as Semantic Web Services"
Author Email(s): gordonp@ucalgary.ca, ekawas@mrl.ubc.ca, mwilkinson@mrl.ubc.ca, csensen@ucalgary.ca
Contact Person: Paul Gordon <gordonp@ucalgary.ca>